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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113149655_113150160_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113149655 - 113150160
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATGC
Flanking Amino Acid:
DGIYILLTMEDISHLVSTQP
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.8
81.9
28.9
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
47.5
-0.2
2
62.83
42.7

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046460
113145867 - 113156573
10707