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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113154945_113156095_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113154945 - 113156095
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTAATT
Flanking Amino Acid:
TDHTNMGECEGSGYFMHFNT
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.7
0.58
1
72.5
42.2
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
64.9
0.55
1.5
78.07
38.6

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046460
113145867 - 113156573
10707
ENSAPLT00000042316
113149329 - 113166155
16827
ENSAPLT00000007411
113145185 - 113167391
22207
ENSAPLT00000047157
113146760 - 113167364
20605