About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113156236_113157652_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113156236 - 113157652
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTCATTAAT
5'SS Class:
weak_major
3'SS Sequence:
CCTCCTCCCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
SIVIQKPPSPVFMDTCSFEL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52
0.05
1.4
63.7
42.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64
0.32
0.9
67.4
26.4
Minor 5ss
34.9
-1.7
2.8
44.2
43
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042316
113149329 - 113166155
16827