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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113156236_113160309_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113156236 - 113160309
Intron Length:
4074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGATGTAT
5'SS Class:
weak_major
3'SS Sequence:
CCTCCTCCCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
SLPWVLIWALVFMDTCSFEL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.1
57.5
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64
0.32
0.9
67.4
26.4
Minor 5ss
35
-1.7
3.4
47.2
48.3
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007411
113145185 - 113167391
22207