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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113156249_113158405_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113156249 - 113158405
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAAAGCT
5'SS Class:
major
3'SS Sequence:
TTTAATATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
LYAFHHSHILSSSLSFMDTC
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
67.9
35.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.5
0.69
0.9
73.7
40.2
Minor 5ss
34.9
-1.7
3.6
52.8
44.2
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047157
113146760 - 113167364
20605