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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113160526_113164818_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113160526 - 113164818
Intron Length:
4293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCACATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTATCTTCAATT
Flanking Amino Acid:
ENYISVFKGSGCWSSVGNRQ
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67
0.38
0.9
65.7
35.3
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
64.4
0.53
1.5
76.74
40.4

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047157
113146760 - 113167364
20605
ENSAPLT00000042316
113149329 - 113166155
16827
ENSAPLT00000007411
113145185 - 113167391
22207