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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113166147_113167193_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113166147 - 113167193
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCATATGCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATAT
Flanking Amino Acid:
LFEGDIKLDRRNSIIGDNYR
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
46.9
-0.1
1.7
51.5
42.2
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
50.7
0.1
1.9
72.96
43.9

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047157
113146760 - 113167364
20605