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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113166150_113167193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113166150 - 113167193
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATAT
Flanking Amino Acid:
LFEGDIKLDRERNSIIGDNY
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.9
0.65
0.9
74
34.6
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
50.7
0.1
1.9
72.96
43.9

Associated Gene:

Gene:
MEP1B
Ensembl Gene ID:
ENSAPLG00000007098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007411
113145185 - 113167391
22207