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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113184894_113186305_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113184894 - 113186305
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATTT
Flanking Amino Acid:
RHQFDYGEFVNLQLDEEAQY
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.9
77
37
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
48.2
-0
1.7
65.49
40.1

Associated Gene:

Gene:
RNF138
Ensembl Gene ID:
ENSAPLG00000019822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028319
113184718 - 113190481
5764