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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113197686_113212462_R

Intron Information:

Intron Rank:
132451
Intron Class:
major
Intron Phase:
Intron Coordinates:
113197686 - 113212462
Intron Length:
14777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TACCTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
84.8
0.78
0.8
76.8
36.4
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
56.3
0.28
1.6
69.92
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024341
113197659 - 113216588
18930