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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113220146_113224193_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113220146 - 113224193
Intron Length:
4048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TGCTACTCAACA
Flanking Amino Acid:
LKPFCRLTSEVHMRDPNNQL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
71.8
36.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
31
-2.2
2.8
37.9
39.7
Minor BPS
59.3
0.29
1.8
69.78
42

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067
ENSAPLT00000008003
113219604 - 113266604
47001