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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113224389_113227163_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113224389 - 113227163
Intron Length:
2775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTAGTATAATA
Flanking Amino Acid:
TAGDYDLNISDRSVKASVPW
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
80
0.75
1
78.6
31
Major PPT
87.5
0.84
0.8
88.9
28.1
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
49.4
-0
2
68.67
38.1

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067