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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113224389_113229989_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113224389 - 113229989
Intron Length:
5601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AAATACTTAAAT
Flanking Amino Acid:
TAGDYDLNISATTPWFESYR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
63.3
0.5
1.6
75.7
39.7

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008003
113219604 - 113266604
47001