Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113237069_113237847_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113237069 - 113237847

Intron Length:

779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTTGGTACT

5'SS Class:

major

3'SS Sequence:

CTTTTCCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAA

U12 Branch Point Sequence:

TCTGCAGTGACA

Flanking Amino Acid:

QAMLYAAGALEMAAVSAFLQ

Intron Amino Acid Position:

459

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.2

69.2

41.1

Major BPS

0.55

1.1

63.4

44.3

Major PPT

85.7

0.8

0.6

81.4

23.6

Minor 5ss

33.5

-1.9

2.9

41.7

38.6

Minor BPS

46.1

-0.3

2.3

63.13

43.4

Associated Gene:

Gene:

TRAPPC8

Ensembl Gene ID:

ENSAPLG00000007624

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039154

113219604 - 113266604

47001

ENSAPLT00000028842

113219604 - 113266670

47067

ENSAPLT00000008003

113219604 - 113266604

47001