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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113237949_113238443_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113237949 - 113238443
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
GTTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATAAAT
Flanking Amino Acid:
TAIQTYRDICKNMVLAERCV
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.5
0.66
0.9
77.9
36.6
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
62.5
0.47
2
88.16
35.9

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067
ENSAPLT00000008003
113219604 - 113266604
47001