Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113240225_113242174_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113240225 - 113242174

Intron Length:

1950

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATCTTTTTATTT

Flanking Amino Acid:

AGHRFSKAGQKKHALRCYCQ

Intron Amino Acid Position:

572

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.3

0.93

0.7

89.4

26.5

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

59.2

0.37

1.5

72.97

39.1

Associated Gene:

Gene:

TRAPPC8

Ensembl Gene ID:

ENSAPLG00000007624

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028842

113219604 - 113266670

47067

ENSAPLT00000008003

113219604 - 113266604

47001

ENSAPLT00000039154

113219604 - 113266604

47001