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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113247246_113247720_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113247246 - 113247720
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
TTCTCTCCAATA
Flanking Amino Acid:
IITEEMPLLEVFFINFPTGL
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
72.2
0.5
0.9
65.8
33.7
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
52.1
0.06
1.9
67.95
39

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067
ENSAPLT00000008003
113219604 - 113266604
47001