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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113248164_113249843_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113248164 - 113249843
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
YESVKRHSKMCHRVLRHTAV
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
64.9
0.37
1
61
37.5
Major PPT
78
0.63
0.8
69.9
35.5
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067
ENSAPLT00000008003
113219604 - 113266604
47001