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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113249992_113251242_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113249992 - 113251242
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
GTCTCTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TCTTATTTGACA
Flanking Amino Acid:
VFVDVENINTSEAGVKEFHI
Intron Amino Acid Position:
1108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
74.6
0.55
0.8
73.3
31.6
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
67
0.53
1.5
75.01
36.5

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028842
113219604 - 113266670
47067
ENSAPLT00000008003
113219604 - 113266604
47001
ENSAPLT00000039154
113219604 - 113266604
47001