About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113264378_113266369_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113264378 - 113266369
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCCTGTTACCT
Flanking Amino Acid:
VMIDLRHKTTSPEALEIHGS
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
89.3
0.88
0.6
87.5
22.7
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
48.3
-0
2.3
72.32
44.9

Associated Gene:

Gene:
TRAPPC8
Ensembl Gene ID:
ENSAPLG00000007624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008003
113219604 - 113266604
47001
ENSAPLT00000039154
113219604 - 113266604
47001
ENSAPLT00000028842
113219604 - 113266670
47067