About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113329891_113330890_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113329891 - 113330890
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATA
Flanking Amino Acid:
IVVGICYMVFGICSLCGNSI
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.6
0.82
0.7
81.5
30.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
64.7
0.46
1.7
75.34
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030375
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038354
113286089 - 113349693
63605