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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113331054_113332391_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113331054 - 113332391
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
GGTTATTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAAGTATTAATT
Flanking Amino Acid:
PLAVTSSLSHRWLYGKHICL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.9
0.47
1
62.9
47
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
50.9
0.11
1.6
65.27
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030375
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038354
113286089 - 113349693
63605