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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113332520_113333736_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113332520 - 113333736
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TCTTCCCTGATT
Flanking Amino Acid:
CCLKICFPAYGNRFRREHGQ
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.1
35.6
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
82.1
0.72
0.9
73.5
41.8
Minor 5ss
44.3
-0.6
2.9
55.7
43.3
Minor BPS
67.7
0.64
1.6
83.81
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030375
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038354
113286089 - 113349693
63605