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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113426406_113430286_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113426406 - 113430286
Intron Length:
3881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCCTCTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCCTCTATT
Flanking Amino Acid:
QACPEKLPYMRGLIDVNMSE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.2
0.63
0.8
77.7
30
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
67.4
0.63
1.8
88.55
36.4

Associated Gene:

Gene:
B4GALT6
Ensembl Gene ID:
ENSAPLG00000009022
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009397
113421150 - 113435537
14388