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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113432461_113433082_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113432461 - 113433082
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAATACAAAATT
Flanking Amino Acid:
FAAKLDKYMYILPYNEFFGG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
47.1
-0.1
2
68.31
42.1

Associated Gene:

Gene:
B4GALT6
Ensembl Gene ID:
ENSAPLG00000009022
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009397
113421150 - 113435537
14388