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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113433206_113434128_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113433206 - 113434128
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATTCTTTATAA
Flanking Amino Acid:
WGGEDDDLWNRVHYAGYNVT
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.5
0.53
0.9
67.7
38.6
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
63.2
0.41
1.7
73.85
37.6

Associated Gene:

Gene:
B4GALT6
Ensembl Gene ID:
ENSAPLG00000009022
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009397
113421150 - 113435537
14388