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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113440335_113441885_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113440335 - 113441885
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CAATTCTTATTT
Flanking Amino Acid:
GLNPFHQHADVVFTANDAGY
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.9
0.92
0.6
83.9
31.1
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
57.9
0.33
1.6
69.26
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009008
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009363
113440227 - 113446524
6298