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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113450963_113455214_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113450963 - 113455214
Intron Length:
4252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCATTACAG
Flanking Amino Acid:
ADGSWQDFATGKTTEYGEIH
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84
30.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
77.5
35.6
Minor 5ss
41.4
-1
2.9
49.9
46.4
Minor BPS
49.5
-0.1
2.1
61.84
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009232
113448824 - 113455959
7136