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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113483268_113484268_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113483268 - 113484268
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CTTCCCATAAGT
Flanking Amino Acid:
LIILAFLLLLLLPLLLLLCP
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
84
0.76
0.8
78.1
30.7
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
57.4
0.31
2
78.46
43.5

Associated Gene:

Gene:
DSG2
Ensembl Gene ID:
ENSAPLG00000007729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020554
113478507 - 113495230
16724
ENSAPLT00000008041
113478507 - 113498112
19606