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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113486006_113486707_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113486006 - 113486707
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAACCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTCTAACC
Flanking Amino Acid:
YTFTMLGVTTDLPAKTVTGT
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
0.8
71.8
32.9
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
65.1
0.45
1.6
75.8
34.1

Associated Gene:

Gene:
DSG2
Ensembl Gene ID:
ENSAPLG00000007729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020554
113478507 - 113495230
16724