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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113486851_113487714_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113486851 - 113487714
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTGATCTTAATC
Flanking Amino Acid:
EDTGKVATNIKYIKGRDVAN
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
68
0.41
1.1
67.5
42.6
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
65.6
0.47
1.3
67.34
38.5

Associated Gene:

Gene:
DSG2
Ensembl Gene ID:
ENSAPLG00000007729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020554
113478507 - 113495230
16724