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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113487354_113487731_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113487354 - 113487731
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGCAACA
5'SS Class:
weak_major
3'SS Sequence:
GGTGTTAGGGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
ACACACAGAAAT
Flanking Amino Acid:
YQALDEDTGKISPHARAYVA
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.2
59
40.2
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
51.6
0.04
1.1
47.6
44.8
Minor 5ss
39.6
-1.2
3.2
49.7
40.7
Minor BPS
40.9
-0.6
1.8
53.85
40

Associated Gene:

Gene:
DSG2
Ensembl Gene ID:
ENSAPLG00000007729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008041
113478507 - 113498112
19606