About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113490015_113490824_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113490015 - 113490824
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCAAGGACA
5'SS Class:
major
3'SS Sequence:
GTGCTTAAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
GATTCTATGACT
Flanking Amino Acid:
YFFNCFFSQLIPLSMGWRST
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.3
76.8
31.5
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
56.7
0.15
1
52.4
40.7
Minor 5ss
24.7
-2.9
3.9
36.6
40.5
Minor BPS
62.3
0.47
1.6
77.99
38

Associated Gene:

Gene:
DSG2
Ensembl Gene ID:
ENSAPLG00000007729
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020554
113478507 - 113495230
16724