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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113520536_113521022_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113520536 - 113521022
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTACA
5'SS Class:
major
3'SS Sequence:
TATTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTCAAG
Flanking Amino Acid:
GIEGAQPEDRDVSHILAPTT
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
71.6
40.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85.5
0.8
0.8
77.2
41.6
Minor 5ss
31
-2.2
2.4
27.5
35.4
Minor BPS
48.7
-0.2
2.2
63.06
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672