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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113521172_113522962_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113521172 - 113522962
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCCTGTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
ATGTCCTAAATC
Flanking Amino Acid:
LMFLGGLIFVLIPILMSMSD
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
70.6
0.46
1.1
75.3
33.5
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
66.2
0.49
1.7
72.39
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672