About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113523368_113524538_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113523368 - 113524538
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
QTTWIIRSINATSAELVSQN
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.1
0.5
1
71.8
26.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672