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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113526685_113526986_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113526685 - 113526986
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTGTCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTGCTAATA
Flanking Amino Acid:
DNFPTLAQSSFSAAISENSL
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
78.6
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.67
0.9
73.2
36
Minor 5ss
41.5
-0.9
3.5
68.1
42.7
Minor BPS
48.7
-0.1
2.3
68.19
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672