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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113528511_113528662_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113528511 - 113528662
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATCTCTTTATCT
Flanking Amino Acid:
VDREVTPVFVIRCFAKHSVT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.4
0.66
0.8
73.6
36
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
69
0.67
1.6
81.9
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672