Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113530139_113530482_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113530139 - 113530482

Intron Length:

344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATATAT

5'SS Class:

strong_major

3'SS Sequence:

CTCTATGTCGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CATATGTTAATG

Flanking Amino Acid:

LDFSTGFHVEVKEWSENGTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

79.6

29.2

Major BPS

84.4

0.85

34.5

Major PPT

62.2

0.28

1.1

62.7

37.2

Minor 5ss

39.7

-1.2

3.1

56.3

47.9

Minor BPS

47.2

-0.3

2.1

52.33

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007308

113516636 - 113537307

20672