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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113530519_113537259_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113530519 - 113537259
Intron Length:
6741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATCATTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTGTCTTTATAT
Flanking Amino Acid:
RTTAFLFLLLVFLDFSTGFH
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79.8
0.67
0.9
73.5
36.3
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
58.3
0.34
1.7
73.81
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007308
113516636 - 113537307
20672