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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113642497_113645156_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113642497 - 113645156
Intron Length:
2660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATCGTTACAT
Flanking Amino Acid:
ALEAGTLVGRVNLNECLQSA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
50.8
0.1
2.4
78.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043511
113640003 - 113661942
21940
ENSAPLT00000006084
113640003 - 113661942
21940