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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113649581_113651163_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113649581 - 113651163
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATGCTTTTATT
Flanking Amino Acid:
TVLSPQLDRELVSTYTLLIE
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
59.4
0.38
1.7
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006084
113640003 - 113661942
21940
ENSAPLT00000043511
113640003 - 113661942
21940