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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113651299_113652394_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113651299 - 113652394
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGATACTTCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTCTTTTGATA
Flanking Amino Acid:
DNAPTFKQIQYETQVEENKV
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
59.8
0.22
1.1
56.7
43.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.9
0.34
1.2
67.53
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043511
113640003 - 113661942
21940
ENSAPLT00000006084
113640003 - 113661942
21940