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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113654244_113654438_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113654244 - 113654438
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
ATACTCTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATACTCTTAACA
Flanking Amino Acid:
DPETGNSEGICYKIAPGQCN
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
71.5
0.48
1
66.4
38.7
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
73.7
0.74
1.2
76.19
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043511
113640003 - 113661942
21940
ENSAPLT00000006084
113640003 - 113661942
21940