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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113654582_113656621_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113654582 - 113656621
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACCATTTAATT
Flanking Amino Acid:
CNITVLAIDRNGKTGTGTLQ
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.5
0.87
0.7
84.4
30.2
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
59.2
0.37
1.5
71.44
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006084
113640003 - 113661942
21940
ENSAPLT00000043511
113640003 - 113661942
21940