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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113656838_113658221_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113656838 - 113658221
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAGAC
5'SS Class:
major
3'SS Sequence:
GTCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCATTGTTAACA
Flanking Amino Acid:
ASSWKITRHNEKSVYLSPRG
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
62.5
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.3
0.86
0.7
83.2
32
Minor 5ss
37.3
-1.4
3.4
50.5
46.2
Minor BPS
54.4
0.14
2.1
64.26
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043511
113640003 - 113661942
21940
ENSAPLT00000006084
113640003 - 113661942
21940