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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113660531_113661155_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113660531 - 113661155
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTTGTATAT
Flanking Amino Acid:
HNFTHPRLGEESIRGHTLIK
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.1
0.7
0.9
77.3
36.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48
-0
2.3
76.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043511
113640003 - 113661942
21940