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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_113682075_113683172_R

Intron Information:

Intron Rank:
150517
Intron Class:
major
Intron Phase:
Intron Coordinates:
113682075 - 113683172
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TCACACTCACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
64.9
0.37
1
67
29.8
Major PPT
91.9
0.94
0.6
84.9
30
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
43.2
-0.5
1.9
50.96
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046010
113677217 - 113683523
6307