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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11379381_11391021_R

Intron Information:

Intron Rank:
148192
Intron Class:
major
Intron Phase:
Intron Coordinates:
11379381 - 11391021
Intron Length:
11641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TACACATTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
76.3
0.59
0.9
76.2
32.4
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
48.3
-0.1
1.8
58.69
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027466
11378919 - 11392888
13970
ENSAPLT00000026828
11378919 - 11392888
13970