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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11391121_11392845_R

Intron Information:

Intron Rank:
148196
Intron Class:
major
Intron Phase:
Intron Coordinates:
11391121 - 11392845
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATCACACATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAGCTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
62.9
0.29
1
52.2
41.4
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
58
0.33
1.5
71.91
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027466
11378919 - 11392888
13970